Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	tt_blastn_wnode	https://github.com/ncbi/pgap.git Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: 5ec226c941562124032ca6861bc8d1aeabf9d91a
	bam to trimmed fastqs and biscuit alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: ecac0fda44df3a8f25ddfbb3e7a023fcbe4cbd0f
	annotator_sub_wf.cwl This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!	https://github.com/baminou/OxoG-Dockstore-Tools.git Path: annotator_sub_wf.cwl Branch/Commit ID: c162a19d83f872fe0dc0077e18bef22c99423e4d
	Subworkflow to allow calling cnvkit with cram instead of bam files	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: 8438316338e66823e1c9aca9f675b2bf33f2aa59
	downsample unaligned BAM and align	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 3034168d652bfa930ba09af20e473a4564a8010d
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: a79cec2331b3e17e382e8e5040405e8dd750c639
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 97572e3a088d79f6a4166385f79e79ea77b11470
	kmer_seq_entry_extract_wnode	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: b360e89d85d83ba3b863bf86074c0ec7e5c58f48
	cache_test_workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/cache_test_workflow.cwl Branch/Commit ID: efd59864c24d97e6d0d1d273025d3ef9003fa44d
	QIIME2 Step 3 QIIME2 Alpha/beta diversity analysis and Alpha rarefaction plotting	https://github.com/Duke-GCB/bespin-cwl.git Path: packed/qiime2-step3-alpha-analysis.cwl Branch/Commit ID: ef08cb00bd55b4c712645d171dbc691e01ed6165 Packed ID: main