Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment and germline variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_exome.cwl Branch/Commit ID: 39ac49f5d080bbb6bfa97246f46a5b621254f622 |
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QIIME2 Step 2 (Deblur option)
QIIME2 Deblur, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: c15f7d33153a36bf08509c3ea046d17ebe07c6bc Packed ID: main |
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pindel parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: baa16f20e91a3f11f8475896e2a66cee183c0d7d |
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WGS QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: baa16f20e91a3f11f8475896e2a66cee183c0d7d |
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Subworkflow to allow calling cnvkit with cram instead of bam files
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: 28d1065759cbd389594ee33b41fd1103ced5436d |
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sum-wf-noET.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/sum-wf-noET.cwl Branch/Commit ID: 9a23706ec061c5d2c02ff60238d218aadf0b5db9 |
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inp_update_wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/inp_update_wf.cwl Branch/Commit ID: 4feec74019b56dc5c51be905a208ff90797661de |
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rna amplicon analysis for fasta files
RNAs - qc, preprocess, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/amplicon-fasta.workflow.cwl Branch/Commit ID: 1844de830f6935901849ccd9966685fbf13e8042 |
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env-wf3.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/env-wf3.cwl Branch/Commit ID: d7b1bf353dcc43c707c49a018f2870584821d389 |
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env-wf1.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/env-wf1.cwl Branch/Commit ID: 4700fbee9a5a3271eef8bc9ee595619d0720431b |
