Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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bacterial_orthology
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https://github.com/ncbi/pgap.git
Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: 4cd1fb565519fbe5f9c462acae01ff608c3784a3 |
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WGS and MT analysis for fastq files
rna / protein - qc, preprocess, filter, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/wgs-fastq.workflow.cwl Branch/Commit ID: 963ca6a73a9f8879d57c08fa59548f98f28e755a |
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Genome conversion and annotation
Workflow for genome annotation from EMBL format |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_sapp_others.cwl Branch/Commit ID: master |
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workflow_demultiplexing.cwl
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https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_demultiplexing.cwl Branch/Commit ID: master |
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scatter2.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/scatter2.cwl Branch/Commit ID: 8949fc2d68efe128ce841739d1190645dbd233bb |
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tt_univec_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: cc7fb3e5c534036638921878527a610fd5e1c2ab |
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final_chunking.cwl
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https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/subworkflows/final_chunking.cwl Branch/Commit ID: fff6fa392370b56e1fe7c374167ba73df3018775 |
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ani_top_n
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https://github.com/ncbi/pgap.git
Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 03cfa6b27e502bda00ceb57b8bd5017076effd45 |
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Nanopore Quality Control and Filtering
**Workflow for nanopore read quality control and contamination filtering.** - FastQC before filtering (read quality control) - Kraken2 taxonomic read classification - Minimap2 read filtering based on given references - FastQC after filtering (read quality control) **All tool CWL files and other workflows can be found here:**<br> Tools: https://git.wur.nl/unlock/cwl/-/tree/master/cwl<br> Workflows: https://git.wur.nl/unlock/cwl/-/tree/master/cwl/workflows<br> WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_nanopore_quality.cwl Branch/Commit ID: master |
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tt_fscr_calls_pass1
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https://github.com/ncbi/pgap.git
Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: 4cd1fb565519fbe5f9c462acae01ff608c3784a3 |
