Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph varscan somatic workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/varscan.cwl

Branch/Commit ID: 3a287b7cb6162cdea79865235d224fea45963d87
workflow graph exome alignment and germline variant detection, with optitype for HLA typing

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_exome_hla_typing.cwl

Branch/Commit ID: 3f3b186da9bf82a5e2ae74ba27aef35a46174ebe
workflow graph kfdrc_process_pe_readslist2.cwl

https://github.com/kids-first/kf-alignment-workflow.git

Path: subworkflows/kfdrc_process_pe_readslist2.cwl

Branch/Commit ID: 105340db0e99918fd7e8a8e14f1cde3022b44653
workflow graph varscanW.cwl

Author: AMBARISH KUMAR er.ambarish@gmail.com; ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using VARSCAN. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence.

https://github.com/ambarishK/bio-cwl-tools.git

Path: varscanW.cwl

Branch/Commit ID: 530e671c113e91fe6b9114eda32103bb980450c7
workflow graph Per-region pindel

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pindel_cat.cwl

Branch/Commit ID: 3a287b7cb6162cdea79865235d224fea45963d87
workflow graph fastq2fasta.cwl

https://github.com/hpobio-lab/viral-analysis.git

Path: cwl/fastq2fasta/fastq2fasta.cwl

Branch/Commit ID: 967e06fd4e5847e326a9b77ff3f0354aff69329a
workflow graph pangenome-generate.cwl

https://github.com/hpobio-lab/viral-analysis.git

Path: cwl/pangenome-generate/pangenome-generate.cwl

Branch/Commit ID: 967e06fd4e5847e326a9b77ff3f0354aff69329a
workflow graph Protein_Inference_workflow.cwl

https://github.com/adamscharlotte/CWL-workflow.git

Path: Protein_Inference_workflow.cwl

Branch/Commit ID: aa273c122d4405b8ad099512baf27178eece46f2
workflow graph exome alignment and germline variant detection, with optitype for HLA typing

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/germline_exome_hla_typing.cwl

Branch/Commit ID: 2e298960837739717ec2928a99c5d811183012e6
workflow graph bam2fasta.cwl

https://github.com/hpobio-lab/viral-analysis.git

Path: cwl/fastq2fasta/bam2fasta.cwl

Branch/Commit ID: 967e06fd4e5847e326a9b77ff3f0354aff69329a