Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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qiime2 Deblur detect/correct sequence data
Option 2: Deblur from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: c15f7d33153a36bf08509c3ea046d17ebe07c6bc Packed ID: qiime2-03-deblur.cwl |
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qiime2 explore sample taxonomic composition
Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: c15f7d33153a36bf08509c3ea046d17ebe07c6bc Packed ID: qiime2-08-taxonomic-analysis.cwl |
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cram_to_bam workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: 28d1065759cbd389594ee33b41fd1103ced5436d |
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HS Metrics workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: bc3e2a0666812d541418a82d0dfc4f0bba595be3 |
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WGS QC workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: qc/workflow_wgs.cwl Branch/Commit ID: e497d1553498eb1c6daecf242ed4fa1375a892fd |
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Varscan Workflow
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https://github.com/genome/cancer-genomics-workflow.git
Path: varscan/germline_workflow.cwl Branch/Commit ID: e497d1553498eb1c6daecf242ed4fa1375a892fd |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 7b4b489474473c3d2d992a838b89632c2b97dc2c |
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cache_test_workflow.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/cache_test_workflow.cwl Branch/Commit ID: cd779a90a4336563dcf13795111f502372c6af83 |
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WGS QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: ad65dc1dfff9afa5077f498b85e699716c47f6cb |
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tt_fscr_calls_pass1
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https://github.com/ncbi/pgap.git
Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: 61e3752f1f5e2ee498fa024c235226f8580be942 |
