Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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pindel parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8 |
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Detect Docm variants
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_cle.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8 |
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strelka workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8 |
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Merge, annotate, and generate a TSV for SVs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8 |
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heatmap.cwl
Generates ATDP heatmap centered on TSS from an array of input BAM files and genelist TSV file. Returns array of heatmap JSON files with the names that have the same basenames as input BAM files, but with .json extension |
https://github.com/Barski-lab/workflows.git
Path: workflows/heatmap.cwl Branch/Commit ID: 1d45ce42181dfce7aceec8bc99a3730eb5285948 |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8 |
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WGS QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8 |
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blastp_wnode_naming
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 17bae57a1f00f5c6db8f3a82d86262f12b8153cf |
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Run pindel on provided region
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: fbeea265295ae596d5a3ba563e766be0c4fc26e8 |
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kmer_cache_retrieve
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 17bae57a1f00f5c6db8f3a82d86262f12b8153cf |
