Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph gsnap_align_dedup_sort_merge.cwl

https://github.com/CompEpigen/PipelineOlympics.git

Path: CWL/workflows/GSNAP/tools/gsnap_align_dedup_sort_merge.cwl

Branch/Commit ID: 3292bcf6fbb81a638885fb839a6ebecf06abbbed
workflow graph genomics-workspace-transcript.cwl

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_genomicsWorkspace/genomics-workspace-transcript.cwl

Branch/Commit ID: e332b88ced14c57ec7a0f2edbdcd61afb1228e77
workflow graph RSeQC workflow or single-end samples

This workflow runs the RSeQC quality control workflow

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/RSeQC/rseqc-bam-qc-SE.cwl

Branch/Commit ID: master
workflow graph revcomp.cwl

https://github.com/common-workflow-language/workflows.git

Path: workflows/sanbi_cwltutorial/revcomp/revcomp.cwl

Branch/Commit ID: master
workflow graph Optimize cuts and Generate IRF

Optimize event selection and compute an IRF using the results.

https://gitlab.cta-observatory.org/cta-computing/dpps/datapipe/datapipe.git

Path: workflows/workflow_optimize_and_irf.cwl

Branch/Commit ID: main
workflow graph pcawg_minibam_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/icgc-tcga-pancancer/pcawg-minibam.git

Path: pcawg_minibam_wf.cwl

Branch/Commit ID: 1.0.0
workflow graph ldv_linc_target.cwl

https://git.astron.nl/RD/LINC.git

Path: workflows/ldv_linc_target.cwl

Branch/Commit ID: master
workflow graph Trim and reformat reads (single and paired end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/trim_and_reformat_reads.cwl

Branch/Commit ID: 71d9c83
workflow graph CUTnRUN_pipeline_packed.cwl#get_spike_in_counts.cwl

https://github.com/CompEpigen/ChIPseq_workflows.git

Path: CWL/workflows/CUTnRUN_pipeline_packed.cwl

Branch/Commit ID: 503df61c4d7fd6078a4089b62382a3c6811d7749

Packed ID: get_spike_in_counts.cwl
workflow graph CUTnRUN_pipeline_packed.cwl#chip_qc.cwl

https://github.com/CompEpigen/ChIPseq_workflows.git

Path: CWL/workflows/CUTnRUN_pipeline_packed.cwl

Branch/Commit ID: 503df61c4d7fd6078a4089b62382a3c6811d7749

Packed ID: chip_qc.cwl