Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph SetTelescopeShadowingParameters

Derive parameters relevant for shadowing components of the telescopes.

 https://github.com/gammasim/workflows.git

Path: workflows/SetTelescopeShadowingParameters.cwl

Branch/Commit ID: main
workflow graph ValidateNightSkyBackgroundMeasurement

Validate measurements of the night-sky background including the impact of stars or moon light.

 https://github.com/gammasim/workflows.git

Path: workflows/ValidateNightSkyBackgroundMeasurement.cwl

Branch/Commit ID: main
workflow graph screen out taxa

Remove sequences which align against a reference set using bowtie2. The references are preformatted (index files)

 https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/organism-screening.workflow.cwl

Branch/Commit ID: 8a5ded15fad8ee1a4315aef1fdc1d53cdcdc12b8
workflow graph kfdrc_annoFuse_wf.cwl

https://github.com/kids-first/kf-rnaseq-workflow.git

Path: workflow/kfdrc_annoFuse_wf.cwl

Branch/Commit ID: 893693621e55c442c22c8fc84934b1767dbaf783
workflow graph Varscan Workflow

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/varscan_germline.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph qa_check_subwf.cwl

This subworkflow will perform a QA check on the OxoG outputs. It will perform the QA check on a single tumour and it associated VCFs

https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git

Path: qa_check_subwf.cwl

Branch/Commit ID: develop
workflow graph foldseek easy-search workflow

\"foldseek easy-search sub-workflow for plant2human workflow Step 1: listing files Step 2: foldseek easy-search process\"

https://github.com/yonesora56/plant2human.git

Path: Workflow/10_foldseek_easy_search_swf_permissive.cwl

Branch/Commit ID: 62a2b6767507ea65ddd36b853b539060840bde48
workflow graph foldseek easy-search workflow (Stringent Mode)

\"foldseek easy-search sub-workflow for plant2human workflow (Stringent Mode) Uses self-built Foldseek index (e.g., Human Proteome v6) without taxonomy filtering. Step 1: listing protein structure files (mmCIF format) Step 2: foldseek easy-search process\"

https://github.com/yonesora56/plant2human.git

Path: Workflow/10_foldseek_easy_search_swf_stringent.cwl

Branch/Commit ID: 62a2b6767507ea65ddd36b853b539060840bde48
workflow graph tt_univec_wnode.cwl

https://github.com/ncbi/pgap.git

Path: task_types/tt_univec_wnode.cwl

Branch/Commit ID: 64c3985e5ce7fa16ce7692faa879c5d58f31089f
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: dfb0e2abd9980bbea86b1ce9887aac812ea47ccb