Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	align_merge_sas	https://github.com/ncbi/pgap.git Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 6fad27f92dd604eca0e341178f594a560d70953b
	alignment for nonhuman with qc	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/alignment_wgs_nonhuman.cwl Branch/Commit ID: 87faba2fff8007ecc95160729b1c7cd0376e46f2
	wf_get_peaks_trim_partial_scatter_se.cwl	https://github.com/YeoLab/eclip.git Path: cwl/wf_get_peaks_trim_partial_scatter_se.cwl Branch/Commit ID: 49a9bcda10de8f55fab2481f424eb9cdf2e5b256
	tt_univec_wnode.cwl	https://github.com/ncbi/pgap.git Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: 8fbfb03088968846bb2c0a79ac50b231b43db64f
	Varscan Workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/varscan_pre_and_post_processing.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
	hello_world.cwl	https://github.com/abessiari/hello_world.git Path: hello_world.cwl Branch/Commit ID: f4384a6f63e1864f46e49bc4a2144bb9ff4036f9
	somatic_exome: exome alignment and somatic variant detection somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f
	kmer_cache_retrieve	https://github.com/ncbi/pgap.git Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 9362082213e20315f76f6f5c235cac3aae565747
	cache_asnb_entries	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_cache_asnb_entries.cwl Branch/Commit ID: 97330968839983824a11ac32dff981d8ecb00955
	strelka workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: 25eab0390f6866ce491b44c89d9e0435d228ab6f