Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment and tumor-only variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_exome.cwl Branch/Commit ID: c23dc7f113ca0b0a3127a5d6c696e98d4799460c |
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umi molecular alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/molecular_qc.cwl Branch/Commit ID: 60edaf6f57eaaf02cda1a3d8cb9a825aa64a43e2 |
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hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 933a0b7554e4ae76a86d25c76b408b5dfc8ed1e3 |
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Prepare user input
Prepare user input for NCBI-PGAP pipeline |
https://github.com/ncbi/pgap.git
Path: prepare_user_input2.cwl Branch/Commit ID: dd53e6d71282b0619ef7123ba2d258b30aef2dd0 |
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extract_gencoll_ids
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https://github.com/ncbi/pgap.git
Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 68b828ac482956a03325623d817780986f34fb31 |
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blastp_wnode_naming
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: dd53e6d71282b0619ef7123ba2d258b30aef2dd0 |
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protein_extract
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https://github.com/ncbi/pgap.git
Path: progs/protein_extract.cwl Branch/Commit ID: dd53e6d71282b0619ef7123ba2d258b30aef2dd0 |
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align_sort_sa
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: 466a62729c20256c2f962d247ffaf2e782a0a023 |
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inpdir_update_wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/inpdir_update_wf.cwl Branch/Commit ID: 1f3ef888d9ef2306c828065c460c1800604f0de4 |
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Tumor-Only Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: e509210450e4c62aecb99a228fc97f0eae2d9580 |
