Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
checkm
|
https://github.com/ncbi/pgap.git
Path: checkm/wf_checkm.cwl Branch/Commit ID: 2a81fcde75ca7665814c8de2210c7bc3121a08a3 |
|
|
|
Unaligned BAM to BQSR and VCF
|
https://github.com/genome/cancer-genomics-workflow.git
Path: unaligned_bam_to_bqsr/workflow_no_dup_marking.cwl Branch/Commit ID: e4c851d65f460e8f48ca184120044fce72cb2433 |
|
|
|
MEME motif
This workflow uses MEME suite for motif finding |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/ChIP-Seq/meme-motif.cwl Branch/Commit ID: f9447c1ac522e17531097c93a169a1a31453e874 |
|
|
|
transform_pack.cwl#integrity.cwl
|
https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/transform_pack.cwl Branch/Commit ID: a57b8f0d8708078e87f13297e065d72db10e38a0 Packed ID: integrity.cwl |
|
|
|
wgs alignment with qc
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/wgs_alignment.cwl Branch/Commit ID: e509210450e4c62aecb99a228fc97f0eae2d9580 |
|
|
|
harmonization_novoalign.cwl
|
https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/harmonization/harmonization_novoalign.cwl Branch/Commit ID: 39ddc4b79dc93076787046f591225dc7ca3100ce |
|
|
|
PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: dd53e6d71282b0619ef7123ba2d258b30aef2dd0 |
|
|
|
tt_hmmsearch_wnode.cwl
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: e351f650524b532f85820b8e53855010b35046c2 |
|
|
|
qiime2 demux sequences
Demultiplexing sequences from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step1-import-demux.cwl Branch/Commit ID: 777dbcd05b5d115371dcda6d54ebaf75dae8afb8 Packed ID: qiime2-02-demux.cwl |
|
|
|
tt_hmmsearch_wnode.cwl
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: 2a81fcde75ca7665814c8de2210c7bc3121a08a3 |
