Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph WES GATK4 Preprocessing

Whole Exome Sequence analysis GATK4 Preprocessing

https://github.com/Duke-GCB/bespin-cwl.git

Path: workflows/exomeseq-gatk4-preprocessing.cwl

Branch/Commit ID: master
workflow graph preprocess_vcf.cwl

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git

Path: preprocess_vcf.cwl

Branch/Commit ID: master
workflow graph facets.cwl

https://github.com/mskcc/argos-cwl.git

Path: modules/pair/facets.cwl

Branch/Commit ID: 2fc732c760a728b6f21336bfdd30e1b7d7ff4473
workflow graph count-lines3-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines3-wf.cwl

Branch/Commit ID: 8d72da06cce7e7a76f59f3c603768a51dd2966ec
workflow graph js-expr-req-wf.cwl#wf

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/js-expr-req-wf.cwl

Branch/Commit ID: ad6f77c648ae9f0eaa2fd53ba7032b0523e12de8

Packed ID: wf
workflow graph dd-calibration.cwl

https://git.astron.nl/RD/VLBI-cwl.git

Path: workflows/dd-calibration.cwl

Branch/Commit ID: 9ae6c03ab2ab8bbcf6530eea736f08cfe0ee3302
workflow graph sum-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/sum-wf.cwl

Branch/Commit ID: 09dd29d3ceebae28fc7c00ad5d91627705a6b0b9
workflow graph kmer_cache_retrieve

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_retrieve.cwl

Branch/Commit ID: 369e2b6c7f4db75099d258729dec1326f55d2cc5
workflow graph step_valuefrom5_wf_v1_1.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/step_valuefrom5_wf_v1_1.cwl

Branch/Commit ID: 33a706bc6b85f1c2824af05bebe7aae19bcb6597
workflow graph heatmap-prepare.cwl

Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order.

https://github.com/Barski-lab/workflows.git

Path: subworkflows/heatmap-prepare.cwl

Branch/Commit ID: 7f5ba081a98fccf9210623d4cef2b5feb7a55e5d