Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph trim-rnaseq-pe.cwl

Runs RNA-Seq BioWardrobe basic analysis with pair-end data file.

https://github.com/Barski-lab/workflows.git

Path: workflows/trim-rnaseq-pe.cwl

Branch/Commit ID: b25b17651171f32005e9d879a9a049382f044baf
workflow graph directory.cwl

Inspect provided directory and return filenames. Generate a new directory and return it (including content).

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/directory.cwl

Branch/Commit ID: c6cced7a2e6389d2eb43342e702677ccb7c7497c
workflow graph secret_wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/secret_wf.cwl

Branch/Commit ID: 8949fc2d68efe128ce841739d1190645dbd233bb
workflow graph dynresreq-workflow-inputdefault.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/dynresreq-workflow-inputdefault.cwl

Branch/Commit ID: b60a42e3cc417c5b75b88fd7c6681abcc7ff5b89
workflow graph rnaseq-pe.cwl

Runs RNA-Seq BioWardrobe basic analysis with pair-end data file.

https://github.com/Barski-lab/workflows.git

Path: workflows/rnaseq-pe.cwl

Branch/Commit ID: 0d919fc3a2f4e4c105142df04d74ac934e3c8c03
workflow graph Chipseq alignment with qc and creating homer tag directory

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/chipseq_alignment.cwl

Branch/Commit ID: 0b0ad1a54f0f6849dc645449b079470448a23095
workflow graph PGAP Pipeline, simple user input

PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)

https://github.com/ncbi/pgap.git

Path: wf_pgap_simple.cwl

Branch/Commit ID: 466a62729c20256c2f962d247ffaf2e782a0a023
workflow graph alignment for mouse with qc

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_wgs_mouse.cwl

Branch/Commit ID: 3042812447d9e8889c6118986490e9c9b9b13223
workflow graph hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather

https://github.com/ncbi/pgap.git

Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl

Branch/Commit ID: e351f650524b532f85820b8e53855010b35046c2
workflow graph scatter-valuefrom-wf1.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/scatter-valuefrom-wf1.cwl

Branch/Commit ID: b60a42e3cc417c5b75b88fd7c6681abcc7ff5b89