Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	js_output_workflow.cwl	https://github.com/common-workflow-language/cwltool.git Path: tests/wf/js_output_workflow.cwl Branch/Commit ID: 07ebbea2bdf97955060c1dd563580b386388519b
	Running cellranger count and lineage inference	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: e8b7759826df40b8bb821b40b15aea960a4951c4
	Bisulfite QC tools	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bisulfite_qc.cwl Branch/Commit ID: 457e101e3fb87e7fd792357afce00ed8ccbfbcdb
	02-trim-pe.cwl ATAC-seq 02 trimming - reads: PE	https://github.com/Duke-GCB/GGR-cwl.git Path: v1.0/ATAC-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: 8aabde14169421a7115c5cd48c4740b3a7bd818f
	bacterial_orthology	https://github.com/ncbi/pgap.git Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1
	Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)	https://github.com/ncbi/pgap.git Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: a402541b8530f30eab726c160da90a23036847a1
	SSU-from-tablehits.cwl	https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 50d7ce38168d5ad79dc413ec210188626449050a
	RNA-Seq alignment and transcript/gene abundance workflow	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: 7638b3075863ae8172f4adaec82fb2eb8e80d3d5
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 5463361069e263ad6455858e054c1337b1d9e752
	Unaligned BAM to BQSR and VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 2decd55996b912feb48be5db1b052aa3274ee405