Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	split_bam_subpipeline.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_somatic/cwl/tools/split_bam_subpipeline.cwl Branch/Commit ID: c287ec74267425b1e70ee1f64b6219806c81779b
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: b560e3abadfb150a0013376d7a189df066ab56f9
	scatter-valuefrom-wf3.cwl#main	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/scatter-valuefrom-wf3.cwl Branch/Commit ID: 368b562a1449e8cd39ae8b7f05926b2bfb9b22df Packed ID: main
	cache_asnb_entries	https://github.com/ncbi/pgap.git Path: task_types/tt_cache_asnb_entries.cwl Branch/Commit ID: 42712bca4c3307d87b6b55f525a4c97cb6f7e288
	Subworkflow to allow calling cnvkit with cram instead of bam files	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: 449bc7e45bb02316d040f73838ef18359e770268
	Running cellranger count and lineage inference	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/single_cell_rnaseq.cwl Branch/Commit ID: 8438316338e66823e1c9aca9f675b2bf33f2aa59
	extract_gencoll_ids	https://github.com/ncbi/pgap.git Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 5331b0836aa7c451d759ef39dc2062000ac21a47
	bam to trimmed fastqs and HISAT alignments	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: 3a287b7cb6162cdea79865235d224fea45963d87
	Transcripts annotation workflow	https://github.com/mscheremetjew/workflow-is-cwl.git Path: workflows/TranscriptsAnnotation-i5only-wf.cwl Branch/Commit ID: 72f702591368397f56d455128f60916902104dd2
	ani_top_n	https://github.com/ncbi/pgap.git Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 42712bca4c3307d87b6b55f525a4c97cb6f7e288