Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
FASTQ to BQSR
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: a9133c999502acf94b433af8d39897e6c2cdf65f |
|
|
|
pass-unconnected.cwl
|
https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/pass-unconnected.cwl Branch/Commit ID: 5e3fac092a720c5670ae3e787eabe1aaade71d83 |
|
|
|
SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination
Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs. |
https://github.com/Barski-lab/workflows.git
Path: tools/soupx-subworkflow.cwl Branch/Commit ID: d80d4f126eb60579dc3c3faf90996acc802155f2 |
|
|
|
Detect Docm variants
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/docm_cle.cwl Branch/Commit ID: 4ae14dd3a447c90022e3dfeb53fc05b8436e2775 |
|
|
|
SSU-from-tablehits.cwl
|
https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 135976dc51f067b76db0a923a832d892ed64264c |
|
|
|
blastp_wnode_struct
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_struct.cwl Branch/Commit ID: 192b813eed8c0d368e69057cb39415175dd15128 |
|
|
|
extract_gencoll_ids
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 01a5c0a8834846ce04fed190eec7d1cc39a3df48 |
|
|
|
tt_fscr_calls_pass1
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: 8761d0526f932dea879403d51251316ef331f082 |
|
|
|
Whole genome alignment and somatic variant detection
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: 480c438a6a7e78c624712aec01bc4214d2bc179c |
|
|
|
count-lines13-wf.cwl
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines13-wf.cwl Branch/Commit ID: 4bf61c8a3d519eefd8b9271af73974bec62535ba |
