Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Subworkflow that runs cnvkit in single sample mode and returns a vcf file
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: 040a3d1a719736d7fce6db83702d3fb7f9d69eac |
|
|
|
scatter GATK HaplotypeCaller over intervals
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: 040a3d1a719736d7fce6db83702d3fb7f9d69eac |
|
|
|
count-lines11-wf.cwl
|
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines11-wf.cwl Branch/Commit ID: 0f4324ed32fbe5c7e53600e10e3d2941db618035 |
|
|
|
super-enhancer.cwl
Both `islands_file` and `islands_control_file` should be produced by the same cwl tool (iaintersect.cwl or macs2-callpeak-biowardrobe-only.cwl) |
https://github.com/barski-lab/workflows.git
Path: workflows/super-enhancer.cwl Branch/Commit ID: 4723ce567089dc9ee51e067b813c5b527a3da16a |
|
|
|
qiime2 DADA2 detect/correct sequence data
Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/duke-gcb/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: 68c92437c854a200433ee684067f81f13de5d8eb Packed ID: qiime2-03-dada2.cwl |
|
|
|
io-union-input-default-wf.cwl
|
https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/io-union-input-default-wf.cwl Branch/Commit ID: 4feec74019b56dc5c51be905a208ff90797661de |
|
|
|
hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: d1fdfc7b5cc8d7ceab92c283ff0f86e90ae21390 |
|
|
|
js-expr-req-wf.cwl#wf
|
https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/js-expr-req-wf.cwl Branch/Commit ID: 6d2998467fada81e5024c1f8594ae167514cb290 Packed ID: wf |
|
|
|
record-in-secondaryFiles-wf.cwl
|
https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/record-in-secondaryFiles-wf.cwl Branch/Commit ID: b60a42e3cc417c5b75b88fd7c6681abcc7ff5b89 |
|
|
|
iwdr_with_nested_dirs.cwl
|
https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/iwdr_with_nested_dirs.cwl Branch/Commit ID: e515226f8ac0f7985cd94dae4a301150adae3050 |
