Explore Workflows

Both `islands_file` and `islands_control_file` should be produced by the same cwl tool (iaintersect.cwl or macs2-callpeak-biowardrobe-only.cwl)

https://github.com/Barski-lab/workflows.git

Path: workflows/super-enhancer.cwl

Branch/Commit ID: b25b17651171f32005e9d879a9a049382f044baf

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/molecular_qc.cwl

Branch/Commit ID: e509210450e4c62aecb99a228fc97f0eae2d9580

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_store.cwl

Branch/Commit ID: 89839cdb0a3216024f5f97af5581ae9753de0496

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/ATAC.cwl

Branch/Commit ID: main

ATAC-seq 03 mapping - reads: PE

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-pe.cwl

Branch/Commit ID: 46e5078373d4668019485d27c71770aec9dd9f0e

ATAC-seq 04 quantification - PE

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/04-peakcall-pe.cwl

Branch/Commit ID: 46e5078373d4668019485d27c71770aec9dd9f0e

https://git.astron.nl/RD/VLBI-cwl.git

Path: workflows/delay-calibration.cwl

Branch/Commit ID: 5a538f0ce369edad6c1e7ad4925d451344ae73fb

https://git.nfdi4plants.org/brilator/Facultative-CAM-in-Talinum.git

Path: workflows/deseq2/workflow.cwl

Branch/Commit ID: main

ATAC-seq - Quantification

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/05-quantification.cwl

Branch/Commit ID: 46e5078373d4668019485d27c71770aec9dd9f0e

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: tools/SSU-from-tablehits.cwl

Branch/Commit ID: ca6ca613