Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment and tumor-only variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_exome.cwl Branch/Commit ID: ecac0fda44df3a8f25ddfbb3e7a023fcbe4cbd0f |
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kfdrc_annoFuse_wf.cwl
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https://github.com/kids-first/kf-rnaseq-workflow.git
Path: workflow/kfdrc_annoFuse_wf.cwl Branch/Commit ID: master |
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pipeline.cwl
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https://github.com/hubmapconsortium/azimuth-annotate.git
Path: pipeline.cwl Branch/Commit ID: 6694e4b |
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step_valuefrom5_wf_with_id_v1_2.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/step_valuefrom5_wf_with_id_v1_2.cwl Branch/Commit ID: 70fbcd9776071edc2fd884308b016a4901b97554 |
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bact_get_kmer_reference
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https://github.com/ncbi/pgap.git
Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: f390475a4e0898d4933f0a28dae278aa35803eb1 |
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Seed Protein Alignments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed_seqids.cwl Branch/Commit ID: 4ab36e0fe1b0ab18cad9d8f1c1f806ec316d7734 |
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wgs alignment and tumor-only variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_wgs.cwl Branch/Commit ID: efbbe5ed51f6ac583e87a348785c72818a33f56e |
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count-lines13-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/count-lines13-wf.cwl Branch/Commit ID: ad6f77c648ae9f0eaa2fd53ba7032b0523e12de8 |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git
Path: preprocess_vcf.cwl Branch/Commit ID: 1.0.0 |
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Detect Variants workflow for WGS pipeline
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/detect_variants_wgs.cwl Branch/Commit ID: low-vaf |
