Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph conditional_step_no_inputs.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/conditional_step_no_inputs.cwl

Branch/Commit ID: 6cfef62c21330672538fd5e9b45ec888569c0a6f
workflow graph scatter2.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/scatter2.cwl

Branch/Commit ID: 6b8f06a9f6f6a570142c7aedc767fea2efa2a0cc
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/visium-pipeline.git

Path: pipeline.cwl

Branch/Commit ID: ff4a5ce
workflow graph ldv_linc_target.cwl

https://git.astron.nl/eosc/prefactor3-cwl.git

Path: workflows/ldv_linc_target.cwl

Branch/Commit ID: dc7a4f725f6e8dde49b0b1db2e3fbde7fb19990a
workflow graph kfdrc_bwamem_subwf.cwl

https://github.com/kids-first/kf-alignment-workflow.git

Path: dev/ultra-opt/kfdrc_bwamem_subwf.cwl

Branch/Commit ID: master
workflow graph biowardrobe_chipseq_se.cwl

The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files.

https://github.com/Barski-lab/ga4gh_challenge.git

Path: biowardrobe_chipseq_se.cwl

Branch/Commit ID: master
workflow graph linc_target.cwl

https://git.astron.nl/RD/LINC.git

Path: workflows/linc_target.cwl

Branch/Commit ID: ccb8d7210076c048b5a9f0810ddb7fa9d6531882
workflow graph qiime2 importing data

Obtaining and importing data from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/duke-gcb/bespin-cwl.git

Path: packed/qiime2-step1-import-demux-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-01-import-data-paired.cwl
workflow graph cmsearch-multimodel.cwl

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/cmsearch-multimodel.cwl

Branch/Commit ID: 71d9c83
workflow graph post_freebayes.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/variant_calling/post_freebayes.cwl

Branch/Commit ID: f83b0e3d2ab7a29a0425bf25b5bae68c3dc70999