Explore Workflows

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/js_output_workflow.cwl

Branch/Commit ID: 46b7f9766d1bc8a4871474eee25ec730b4e173da

Use fastq file as input and do trimming and quality check. Quality checks are done before trimming and after trimming.

https://github.com/ddbj/SAPPORO_test_workflow.git

Path: workflow/trimming-and-qc/trimming-and-qc-no-upload/trimming-and-qc-no-upload.cwl

Branch/Commit ID: master

https://github.com/markrobbo/workflows.git

Path: workflows/hello/exome_alignment_packed.cwl

Branch/Commit ID: master

Packed ID: workflow.cwl_2

Simple 2 step workflow to check that workflow steps are independently picking up on the number of processes. First run the parallel get PIDs step (on the input num procs) then run (on a single proc) the line count. This should equal the input.

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/mpi_simple_wf.cwl

Branch/Commit ID: 6b8f06a9f6f6a570142c7aedc767fea2efa2a0cc

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/any-type-compat.cwl

Branch/Commit ID: e8b3565a008d95859fc44227987a54e6a53a8c29

https://github.com/betisb/InputParser.git

Path: cwl/blast-scatter-flow-needs-work.cwl

Branch/Commit ID: master

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: master

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/step-valuefrom4-wf.cwl

Branch/Commit ID: main

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: 27aa22e6f5d2fca75abca42d52867259fd0725b9

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/conditional_step_no_inputs.cwl

Branch/Commit ID: 6cfef62c21330672538fd5e9b45ec888569c0a6f