Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	exome alignment and somatic variant detection for cle purpose	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_exome_cle.cwl Branch/Commit ID: 8eb189a4a34dc8cd86380685f814c79a444a7601
	Unaligned to aligned BAM	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/align.cwl Branch/Commit ID: 27dcb1ae121be6a23057b74332b8c752ea425735
	Replace legacy AML Trio Assay	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/aml_trio_cle.cwl Branch/Commit ID: 8eb189a4a34dc8cd86380685f814c79a444a7601
	kmer_top_n_extract	https://github.com/ncbi-gpipe/pgap.git Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 41dfc42a730087189122a2f74b2f547a4665a225
	process VCF workflow	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/strelka_process_vcf.cwl Branch/Commit ID: 27dcb1ae121be6a23057b74332b8c752ea425735
	io-int-wf.cwl	https://github.com/common-workflow-language/common-workflow-language.git Path: v1.0/v1.0/io-int-wf.cwl Branch/Commit ID: f24c797ea017a467185b516ea4862c9c494c9d33
	Whole genome alignment and somatic variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: 8eb189a4a34dc8cd86380685f814c79a444a7601
	Run pindel on provided region	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 27dcb1ae121be6a23057b74332b8c752ea425735
	ChIP-seq peak caller workflow MACS2 based This workflow execute peak caller and QC for ChIP-seq using MACS2	https://github.com/ncbi/cwl-ngs-workflows-cbb.git Path: workflows/ChIP-Seq/peak-calling-MACS2.cwl Branch/Commit ID: 33123d6a92bf0038951820d0d2c9cf501ae2ebf6
	phase VCF	https://github.com/genome/analysis-workflows.git Path: definitions/subworkflows/phase_vcf.cwl Branch/Commit ID: 27dcb1ae121be6a23057b74332b8c752ea425735