Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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kmer_ref_compare_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_ref_compare_wnode.cwl Branch/Commit ID: 6d04f5d65d1d4893706d9ae7e27341633333054f |
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multiome pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) and HuBMAP scATAC-seq pipeline
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https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git
Path: pipeline.cwl Branch/Commit ID: 999afe5b202578ecd8e38bedf3e4788a431e6a58 |
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kmer_cache_store
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: 369afa7090a7480e6a0b144eff967a4a52b6fde2 |
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bam to trimmed fastqs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl Branch/Commit ID: 026bba9511561246ad65458f0f55c88cead26fbd |
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fasta2taxa-plot
Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots. |
https://github.com/MG-RAST/qiime-pipeline.git
Path: CWL/Workflows/qiime/join-reads2plot.cwl Branch/Commit ID: cd7b1a7b05f0d716ad784bc4911f5850a7737a40 |
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tt_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: 4ee5718856e3e890949ac48b9a30b68e11ccdd11 |
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wffail.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/wffail.cwl Branch/Commit ID: 766d58b47180d92618074679eb9f3c6c30acf638 |
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maw.cwl
multiple mzml files, all with the same condition |
https://github.com/zmahnoor14/MAW.git
Path: cwl/maw.cwl Branch/Commit ID: a8b2df3f3918ee400b236c49b34092959293b41b |
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1st-workflow.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/1st-workflow.cwl Branch/Commit ID: 0037b6d673437f220987916fea61d3832797095d |
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Seed Search Compartments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_seed.cwl Branch/Commit ID: 4ee5718856e3e890949ac48b9a30b68e11ccdd11 |
