Explore Workflows
View already parsed workflows here or click here to add your own
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/mskcc/ACCESS-Pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
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tt_univec_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: dev |
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linc_calibrator.cwl
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https://git.astron.nl/RD/LINC.git
Path: workflows/linc_calibrator.cwl Branch/Commit ID: master |
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indexing_bed
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/indexing_bed.cwl Branch/Commit ID: 1.0.7 |
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bowtie-alignment.cwl
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https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/ChIP-Seq/bowtie-alignment.cwl Branch/Commit ID: master |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants_nonhuman.cwl Branch/Commit ID: b465f0da2806ddb6df481409541d13288ccb40ec |
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Find reads with predicted coding sequences above 60 AA in length
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/orf_prediction.cwl Branch/Commit ID: 71d9c83 |
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Filter Protein Seeds; Find ProSplign Alignments
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_compart_filter_prosplign.cwl Branch/Commit ID: test |
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ValidateTelescopeSimulationModel
Validate the telescope simulation model as a whole. |
https://github.com/gammasim/workflows.git
Path: workflows/ValidateTelescopeSimulationModel.cwl Branch/Commit ID: main |
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vecscreen.cwl
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https://github.com/ncbi/pgap.git
Path: vecscreen/vecscreen.cwl Branch/Commit ID: test |
