Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Initial CNVkit analysis
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https://github.com/ChrisMaherLab/PACT.git
Path: subworkflows/cnvkit_initial_analysis.cwl Branch/Commit ID: master |
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prefetch_fastq.cwl
Worfklow combining an SRA fetch from NCBI with a fastq-dump cmd |
https://github.com/common-workflow-library/bio-cwl-tools.git
Path: sratoolkit/prefetch_fastq.cwl Branch/Commit ID: release |
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Subworkflow to allow calling cnvkit with cram instead of bam files
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: 86fbeb95ef85111f3b4c6bc2bba8f06cef64e157 |
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gsnap_align_dedup_sort_merge.cwl
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https://github.com/CompEpigen/PipelineOlympics.git
Path: CWL/workflows/GSNAP/tools/gsnap_align_dedup_sort_merge.cwl Branch/Commit ID: main |
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basic-text-statistics-pattern-dir.cwl
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https://github.com/WhatWorksWhenForWhom/nlppln.git
Path: nlppln/cwl/basic-text-statistics-pattern-dir.cwl Branch/Commit ID: master |
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tt_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastn_wnode.cwl Branch/Commit ID: be9d12a3f8e1924183a1dc6a0bda6ada4195ca71 |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/pvacseq.cwl Branch/Commit ID: 72c4c3115956340f35e72cda1fd46ec276f1ca03 |
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count-lines10-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/count-lines10-wf.cwl Branch/Commit ID: ad6f77c648ae9f0eaa2fd53ba7032b0523e12de8 |
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chksum_for_corrupted_files.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_for_corrupted_files.cwl Branch/Commit ID: 0.5.0_test |
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EMG assembly for paired end Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: master |
