Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Subworkflow that runs cnvkit in single sample mode and returns a vcf file

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cnvkit_single_sample.cwl

Branch/Commit ID: c625e05eefb1754353c1bdfa46c01dc61e6233dd
workflow graph search.cwl#main

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/search.cwl

Branch/Commit ID: ca8e6661b5cab1f017e5bc4024650722dae4d50b

Packed ID: main
workflow graph adapter for sequence_align_and_tag

Some workflow engines won't stage files in our nested structure, so parse it out here

 https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/sequence_align_and_tag_adapter.cwl

Branch/Commit ID: 389f6edccab082d947bee9c032f59dbdf9f7c325
workflow graph kfdrc_process_se_readslist2.cwl

https://github.com/inab/kf-alignment-workflow.git

Path: subworkflows/kfdrc_process_se_readslist2.cwl

Branch/Commit ID: 425c6561b6c52139190666b761cb0350cfd8ad9c
workflow graph kfdrc_bam_to_gvcf.cwl

https://github.com/inab/kf-alignment-workflow.git

Path: subworkflows/kfdrc_bam_to_gvcf.cwl

Branch/Commit ID: 425c6561b6c52139190666b761cb0350cfd8ad9c
workflow graph kfdrc_process_bamlist.cwl

https://github.com/inab/kf-alignment-workflow.git

Path: subworkflows/kfdrc_process_bamlist.cwl

Branch/Commit ID: 425c6561b6c52139190666b761cb0350cfd8ad9c
workflow graph fp_filter workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/fp_filter.cwl

Branch/Commit ID: 046e980d131ebaf71f76599a749e2294c40c9d0d
workflow graph kfdrc_process_pe_readslist2.cwl

https://github.com/inab/kf-alignment-workflow.git

Path: subworkflows/kfdrc_process_pe_readslist2.cwl

Branch/Commit ID: 425c6561b6c52139190666b761cb0350cfd8ad9c
workflow graph process VCF workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/strelka_process_vcf.cwl

Branch/Commit ID: 046e980d131ebaf71f76599a749e2294c40c9d0d
workflow graph bam to trimmed fastqs and HISAT alignments

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl

Branch/Commit ID: f45b52a24c7b54a75368dcbab24b4eb2c5a9c75a