Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph qc_workflow.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/QC/qc_workflow.cwl

Branch/Commit ID: master
workflow graph exome alignment and tumor-only variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/tumor_only_exome.cwl

Branch/Commit ID: master
workflow graph downsample unaligned BAM and align

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/downsampled_alignment.cwl

Branch/Commit ID: 24e5290aec441665c6976ee3ee8ae3574c49c6b5
workflow graph find_hotspots_in_normals.cwl

Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/subworkflows/find_hotspots_in_normals.cwl

Branch/Commit ID: master
workflow graph exomeseq-gatk4-02-variantdiscovery.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-gatk4-02-variantdiscovery.cwl

Branch/Commit ID: gatk4-fixes
workflow graph chksum_for_corrupted_fastq_files.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_for_corrupted_fastq_files.cwl

Branch/Commit ID: master
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: 5e82174
workflow graph main-wes_chr21_test.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: wes-agha-test/wes_chr21_test-workflow-arvados/main-wes_chr21_test.cwl

Branch/Commit ID: master
workflow graph 03-map-se.cwl

ATAC-seq 03 mapping - reads: SE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-se.cwl

Branch/Commit ID: master
workflow graph 5S-from-tablehits.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: f914942