Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph rest_parallel.cwl

https://github.com/anandanlk/Community-FL.git

Path: Decentralized-FL/CWL_Workflow/rest_parallel.cwl

Branch/Commit ID: master
workflow graph step_valuefrom5_wf_with_id_v1_2.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/step_valuefrom5_wf_with_id_v1_2.cwl

Branch/Commit ID: aa13f7bad47e8df2349bdebd163e1830537d7f93
workflow graph rnaseq-se-dutp.cwl

Runs RNA-Seq dUTP BioWardrobe basic analysis with strand specific single-end data file.

https://github.com/Barski-lab/workflows.git

Path: workflows/rnaseq-se-dutp.cwl

Branch/Commit ID: master
workflow graph calculate_contamination_workflow.cwl

GATK4.1.2 Calculate tumor-normal contamination workflow

https://github.com/NCI-GDC/gatk4_mutect2_cwl.git

Path: subworkflows/calculate_contamination_workflow.cwl

Branch/Commit ID: master
workflow graph workflow_input_sf_expr_array.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/workflow_input_sf_expr_array.cwl

Branch/Commit ID: aa13f7bad47e8df2349bdebd163e1830537d7f93
workflow graph cnv_gridss

CNV GRIDSS calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_gridss.cwl

Branch/Commit ID: 1.0.5
workflow graph Rapthor imaging subworkflow

This subworkflow performs imaging with direction-dependent corrections. The imaging data are generated (and averaged if possible) and WSClean is used to perform the imaging. Masking and sky model filtering is then done using PyBDSF.

https://github.com/Bonadux/cwl-workflows-demo.git

Path: rapthor_use_case/rapthor-subworkflows-cwl/image_4/subpipeline_parset.cwl

Branch/Commit ID: 1b7bcb6e4b5ab4608d74fa36249a2b6644fc4e9a
workflow graph Rapthor imaging workflow

This workflow performs imaging with direction-dependent corrections. The imaging data are generated (and averaged if possible) and WSClean is used to perform the imaging. Masking and sky model filtering is then done using PyBDSF.

https://github.com/Bonadux/cwl-workflows-demo.git

Path: rapthor_use_case/rapthor-subworkflows-cwl/image_4/main.cwl

Branch/Commit ID: 1b7bcb6e4b5ab4608d74fa36249a2b6644fc4e9a
workflow graph Rapthor DD calibration workflow

This workflow performs direction-dependent calibration. In general, calibration is done in three steps: (1) a fast phase-only calibration (with core stations constrianed to have the same solutions) to correct for ionospheric effects, (2) a joint slow amplitude calibration (with all stations constrained to have the same solutions) to correct for beam errors, and (3) a further unconstrained slow gain calibration to correct for station-to-station differences. Steps (2) and (3) are skipped if the calibration is phase-only. This calibration scheme works for both HBA and LBA data. The final products of this workflow are solution tables (h5parm files) and plots.

https://github.com/Bonadux/cwl-workflows-demo.git

Path: rapthor_use_case/rapthor-subworkflows-cwl/calibrate_4/main.cwl

Branch/Commit ID: 1b7bcb6e4b5ab4608d74fa36249a2b6644fc4e9a
workflow graph pipeline.cwl

https://github.com/hubmapconsortium/hra-workflows.git

Path: pipeline.cwl

Branch/Commit ID: ba1f3f9e0dd74d4f50358f5c95f1d5a3d28e02ae