Explore Workflows

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/5S-from-tablehits.cwl

Branch/Commit ID: cff6ca51706f18b1c7052d801d05414f489cec58

https://github.com/ska-sa/den.git

Path: cwl/workflows/flagging.cwl

Branch/Commit ID: 485e26165243201bdff355b28ff7ae2625af83e5

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/fastq_readgroup_stats/status_postgres.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines10-wf.cwl

Branch/Commit ID: e0cc5bd1c2fc4625f2cb5a819d3c1939aa8460db

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: 9b7fde6e34f632ceb1d0e2b1a5799a6f722688c5

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: tools/unix/unix_align_workflow.cwl

Branch/Commit ID: b0ff19e4e2944340dca1aceaa20ba10624fa59d0

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines2-wf.cwl

Branch/Commit ID: e0cc5bd1c2fc4625f2cb5a819d3c1939aa8460db

This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow.

https://github.com/baminou/OxoG-Dockstore-Tools.git

Path: preprocess_vcf.cwl

Branch/Commit ID: 3bd1b85615fcae5092ccacce2eac395b9a6f1950

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/unix/download_root.cwl

Branch/Commit ID: 3fa737f9162bbfbdbc243a3b1ff7c8e110875eba

https://github.com/nci-gdc/gdc-dnaseq-cwl.git

Path: workflows/unix/download_root.cwl

Branch/Commit ID: 3fa737f9162bbfbdbc243a3b1ff7c8e110875eba