Explore Workflows

https://github.com/giannisdoukas/CWLJNIKernel.git

Path: tests/cwl/scatter_tail.cwl

Branch/Commit ID: master

https://github.com/stain/workflow-is-cwl.git

Path: workflows/TransDecoder-v5-wf-2steps.cwl

Branch/Commit ID: avoid-spaces

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl

Branch/Commit ID: downsample_and_recall

Note that this is an example and the metadata is not necessarily consistent.

https://github.com/eritema/cwlExamples.git

Path: Example15/ex15.cwl

Branch/Commit ID: master

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git

Path: annotator_sub_wf.cwl

Branch/Commit ID: 1.0.0

https://github.com/vdikan/cwl-gk-thermal.git

Path: cwl/gk-run-siesta-snapshot.cwl

Branch/Commit ID: master

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/pindel_cat.cwl

Branch/Commit ID: downsample_and_recall

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/icgc-tcga-pancancer/pcawg-snv-indel-annotation.git

Path: annotator_sub_wf.cwl

Branch/Commit ID: develop

CNV CODEX calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/subworkflows/cnv_codex.cwl

Branch/Commit ID: 3bb03c9b

Whole Exome Sequence analysis Preprocessing

https://github.com/Duke-GCB/bespin-cwl.git

Path: workflows/exomeseq-preprocessing.cwl

Branch/Commit ID: master