Explore Workflows

https://github.com/CompEpigen/ChIPseq_workflows.git

Path: CWL/workflows/ACTseq.cwl

Branch/Commit ID: master

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: 9c57dba

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/dynresreq-workflow-tooldefault.cwl

Branch/Commit ID: main

Animal Genome Assembly pipeline by Kazuharu Arakawa (@gaou_ak), CWLized by Tazro Ohta (@inutano). This workflow contains assembly step by canu which may take a few weeks to complete. Be careful to run!

https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/animal-genome-assembly/animal-genome-assembly.with_canu.cwl

Branch/Commit ID: main

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/module-2.cwl

Branch/Commit ID: master

https://github.com/cr-ste-justine/chujs-alignment-workflow.git

Path: workflows/wgsp_alignment_fq_wf.cwl

Branch/Commit ID: dev

https://github.com/Marco-Salvi/cwl-ro-crate.git

Path: ST520107.cwl

Branch/Commit ID: main

https://github.com/kids-first/kf-rnaseq-workflow.git

Path: workflow/rmats_wf.cwl

Branch/Commit ID: master

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/david4096/oxog-dockstore-tools.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: develop

Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-05-phylogeny.cwl