Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph emep_workflow.cwl

https://github.com/UoMResearchIT/wrf_emep_cwl_linear_workflow.git

Path: workflows/emep_workflow.cwl

Branch/Commit ID: develop
workflow graph WES GATK4

Whole Exome Sequence analysis GATK4 Preprocessing

https://github.com/Duke-GCB/bespin-cwl.git

Path: workflows/exomeseq-gatk4.cwl

Branch/Commit ID: master
workflow graph QIIME2 Step 2 (DADA2 option)

QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: main
workflow graph wf-alignment.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: somatic-lowfreq/pisces-titr-workflow/wf-alignment.cwl

Branch/Commit ID: master
workflow graph Bacterial Annotation, ab initio (first pass) searched against AntiFam

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_ab_initio_antifam.cwl

Branch/Commit ID: a1f39f21670be28427ceb91ceaeb9339545c18fc
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: 135976d
workflow graph search.cwl#main

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/search.cwl

Branch/Commit ID: master

Packed ID: main
workflow graph wf-variantcall.cwl

https://github.com/farahzkhan/bcbio_test_cwl.git

Path: somatic/somatic-workflow/wf-variantcall.cwl

Branch/Commit ID: master
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: steps/salmon-quantification.cwl

Branch/Commit ID: cee6caf
workflow graph steps.cwl

https://github.com/DimitraPanou/scRNAseq-cwl.git

Path: subworkflows/steps.cwl

Branch/Commit ID: 4e9c15b