Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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tt_fscr_calls_pass1
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https://github.com/ncbi/pgap.git
Path: task_types/tt_fscr_calls_pass1.cwl Branch/Commit ID: 68311dd5328bf6b782a370a0253b41062a3359a3 |
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spurious_annot
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass1.cwl Branch/Commit ID: master |
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waltz_workflow_all_bams.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/waltz/waltz_workflow_all_bams.cwl Branch/Commit ID: 0.0.33_dmp |
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Compute library complexity
This workflow compute library complexity |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/bedtools-bam-pbc.cwl Branch/Commit ID: master |
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bacterial_screening.cwl
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https://github.com/ncbi/pgap.git
Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: test |
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transform.cwl
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https://github.com/NCI-GDC/gdc-dnaseq-cwl.git
Path: workflows/dnaseq/transform.cwl Branch/Commit ID: 1.0 |
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find_hotspots_in_normals.cwl
Workflow to find hotspot VAFs from duplex (for Tumor sample) and unfiltered (for Normal sample) pileups. These inputs are all required to be sorted in the same order: sample_ids patient_ids sample_classes unfiltered_pileups duplex_pileups |
https://github.com/andurill/access-pipeline.git
Path: workflows/subworkflows/find_hotspots_in_normals.cwl Branch/Commit ID: master |
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collapsed_fastq_to_bam.cwl
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https://github.com/andurill/ACCESS-Pipeline.git
Path: workflows/marianas/collapsed_fastq_to_bam.cwl Branch/Commit ID: master |
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align_merge_sas
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: 2c4c3c5e30e751f4793a5b015bbc5960ef6b03da |
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bed_to_coverage_track.cwl
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https://github.com/CompEpigen/ATACseq_workflows.git
Path: CWL/workflow_modules/bed_to_coverage_track.cwl Branch/Commit ID: master |
