Explore Workflows

RNA-seq 04 quantification

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-pe-stranded.cwl

Branch/Commit ID: master

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/aml_trio_cle.cwl

Branch/Commit ID: master

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/validate_interleaved_fq.cwl

Branch/Commit ID: 0.5.0_test

https://github.com/ICGC-TCGA-PanCancer/Seqware-BWA-Workflow.git

Path: checker-workflow-wrapping-workflow.cwl

Branch/Commit ID: 2.6.8_1.4

https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/transcriptome-assembly/transcriptome-assembly.cwl

Branch/Commit ID: main

Animal Genome Assembly pipeline by Kazuharu Arakawa (@gaou_ak) without assembly step by canu, CWLized by Tazro Ohta (@inutano)

https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/animal-genome-assembly/animal-genome-assembly.packed.cwl

Branch/Commit ID: main

Packed ID: main

https://github.com/DataBiosphere/topmed-workflows.git

Path: aligner/topmed-cwl/workflow/alignment_workflow.cwl

Branch/Commit ID: 1.32.0

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/step-valuefrom3-wf.cwl

Branch/Commit ID: master

STARR-seq pipeline - reads: PE

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/STARR-seq_pipeline/pipeline-pe.cwl

Branch/Commit ID: master

https://github.com/DataBiosphere/topmed-workflows.git

Path: vcf-comparator/ConcordanceTestWorkflow.cwl

Branch/Commit ID: 1.28.0