Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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umi molecular alignment workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/molecular_alignment.cwl Branch/Commit ID: low-vaf |
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wgs alignment with qc
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/alignment_wgs.cwl Branch/Commit ID: low-vaf |
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dedup-3-pass-distr.cwl
run 3-pass dedup: algo LocusCollector + algo Dedup output_dup_read_name + algo Dedup dedup_by_read_name sequentially in distributed mode |
https://github.com/sentieon/sentieon-cwl.git
Path: stage/dedup-3-pass-distr.cwl Branch/Commit ID: master |
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Hello World
Outputs a message using echo |
https://github.com/common-workflow-library/legacy.git
Path: workflows/hello/hello-param.cwl Branch/Commit ID: master |
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merge_duprem_filter.cwl
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https://github.com/CompEpigen/ChIPseq_workflows.git
Path: CWL/workflow_modules/merge_duprem_filter.cwl Branch/Commit ID: master |
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SetParameterFromExternal
Receive parameter update (e.g., by querying an external source like a configuration or calibration database) or by expert input (e.g., by a member of a telescope team or a simulation pipeline expert). |
https://github.com/gammasim/workflows.git
Path: workflows/SetParameterFromExternal.cwl Branch/Commit ID: main |
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bacterial_orthology
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https://github.com/ncbi/pgap.git
Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: master |
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bwa-mem-sort-distr.cwl
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https://github.com/Sentieon/Sentieon-cwl.git
Path: stage/bwa-mem-sort-distr.cwl Branch/Commit ID: master |
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genomics-workspace-transcript.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: flow_genomicsWorkspace/genomics-workspace-transcript.cwl Branch/Commit ID: master |
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stdout-wf_v1_2.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/stdout-wf_v1_2.cwl Branch/Commit ID: main |
