Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph FragPipe: ProteinProphet

This workflow step takes the PeptideProphet output files from the first step containing the peptide validation and calculates the protein inference using ProteinProphet.

 https://github.com/cwl-apps/fragpipe-proteomics-pipeline-tutorial.git

Path: FragPipe-ProteinProphet/fragpipe-proteinprophet.cwl

Branch/Commit ID: main
workflow graph tRNA_selection.cwl

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 8515542
workflow graph downsample unaligned BAM and align

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/downsampled_alignment.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph sorter.cwl

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/sorter.cwl

Branch/Commit ID: master
workflow graph fileSizer.cwl

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/fileSizer.cwl

Branch/Commit ID: master
workflow graph chip-seq-alignment-bowtie.cwl

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/chip-seq-alignment-bowtie.cwl

Branch/Commit ID: b5a440939ac6022ee81aeeb0dd7daf3983228a61
workflow graph image_series.cwl

https://github.com/peijin94/LOFAR-Sun-tools.git

Path: utils/IM/LINC/lincSun/workflow/image_series.cwl

Branch/Commit ID: master
workflow graph image_workflow.cwl

https://github.com/peijin94/LOFAR-Sun-tools.git

Path: utils/IM/LINC/lincSun/workflow/image_workflow.cwl

Branch/Commit ID: master
workflow graph umi molecular alignment workflow

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/molecular_alignment.cwl

Branch/Commit ID: low-vaf
workflow graph wgs alignment with qc

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/alignment_wgs.cwl

Branch/Commit ID: low-vaf