Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph module-4

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/module-4.cwl

Branch/Commit ID: dev
workflow graph merge_filter.cwl

https://github.com/CompEpigen/ChIPseq_workflows.git

Path: CWL/workflow_modules/merge_filter.cwl

Branch/Commit ID: master
workflow graph cnv_exomedepth

CNV ExomeDepth calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/abstract_operations/subworkflows/cnv_exome_depth.cwl

Branch/Commit ID: master
workflow graph forome_vcf_upload_uri.cwl

https://github.com/ForomePlatform/vcf-upload-cwl-pipeline.git

Path: forome_vcf_upload_uri.cwl

Branch/Commit ID: main
workflow graph Initial CNVkit analysis

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/cnvkit_initial_analysis.cwl

Branch/Commit ID: master
workflow graph Runs InterProScan on batches of sequences to retrieve functional annotations.

https://github.com/mscheremetjew/workflow-is-cwl.git

Path: workflows/InterProScan-v5-chunked-wf.cwl

Branch/Commit ID: master
workflow graph gk-parse-current.cwl

https://github.com/vdikan/cwl-gk-thermal.git

Path: cwl/gk-parse-current.cwl

Branch/Commit ID: master
workflow graph Illumina read quality control, trimming and contamination filter.

**Workflow for Illumina paired read quality control, trimming and filtering.**<br /> Multiple paired datasets will be merged into single paired dataset.<br /> Summary: - FastQC on raw data files<br /> - fastp for read quality trimming<br /> - BBduk for phiX and (optional) rRNA filtering<br /> - Kraken2 for taxonomic classification of reads (optional)<br /> - BBmap for (contamination) filtering using given references (optional)<br /> - FastQC on filtered (merged) data<br /> **All tool CWL files and other workflows can be found here:**<br> Tools: https://git.wur.nl/unlock/cwl/-/tree/master/cwl<br> Workflows: https://git.wur.nl/unlock/cwl/-/tree/master/cwl/workflows<br> WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default

https://git.wur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_illumina_quality.cwl

Branch/Commit ID: master
workflow graph fillout_singleton_processing.cwl

https://github.com/mskcc/pluto-cwl.git

Path: cwl/fillout_singleton_processing.cwl

Branch/Commit ID: master
workflow graph blastp_wnode_naming

https://github.com/ncbi/pgap.git

Path: task_types/tt_blastp_wnode_naming.cwl

Branch/Commit ID: dev