Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph abra_workflow.cwl

https://github.com/andurill/ACCESS-Pipeline.git

Path: workflows/ABRA/abra_workflow.cwl

Branch/Commit ID: 0.0.33_dmp
workflow graph wf_trim_and_map_se.cwl

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/YeoLab/eclip.git

Path: cwl/wf_trim_and_map_se.cwl

Branch/Commit ID: master
workflow graph workflow.cwl

https://github.com/fstrozzi/scalability-reproducibility-chapter.git

Path: CWL/workflow.cwl

Branch/Commit ID: master
workflow graph Bacterial Annotation, ab initio (first pass) searched against AntiFam

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_ab_initio_antifam.cwl

Branch/Commit ID: master
workflow graph qiime2 explore sample taxonomic composition

Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-deblur.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-08-taxonomic-analysis.cwl
workflow graph pair-workflow.cwl

https://github.com/mskcc/argos-cwl.git

Path: workflows/pair-workflow.cwl

Branch/Commit ID: master
workflow graph mutations.cwl

https://github.com/bioexcel/biobb_wf_mutations.git

Path: biobb_wf_mutations/cwl/mutations.cwl

Branch/Commit ID: master
workflow graph wf-loadContents2.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/wf-loadContents2.cwl

Branch/Commit ID: main
workflow graph EMG pipeline v3.0 (single end version)

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3.cwl

Branch/Commit ID: 2104dc3
workflow graph Add snv and indel bam-readcount files to a vcf

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/vcf_readcount_annotator.cwl

Branch/Commit ID: low-vaf