Explore Workflows

Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order.

https://github.com/mr-c/datirium-workflows.git

Path: tools/heatmap-prepare.cwl

Branch/Commit ID: license_test

https://github.com/kids-first/kf-alignment-workflow.git

Path: workflows/kfdrc-gatk-haplotypecaller-wf.cwl

Branch/Commit ID: master

https://github.com/ncbi/pgap.git

Path: task_types/tt_univec_wnode.cwl

Branch/Commit ID: f697b1836fea55d442bedc2bb77afe5d4ef94b05

This workflow prepares the configuration of the subsequent production steps.

https://gitlab.cta-observatory.org/cta-computing/dpps/dpps-workflows.git

Path: workflows/wms/uc-wms-XXX.cwl

Branch/Commit ID: main

https://github.com/CompEpigen/ATACseq_workflows.git

Path: CWL/workflows/ATACseq.cwl

Branch/Commit ID: master

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git

Path: oxog_sub_wf.cwl

Branch/Commit ID: 1.0.0

https://github.com/nlesc-sherlock/corporadb.git

Path: cwl/runAll.cwl

Branch/Commit ID: master

RNA-seq 04 quantification

https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-pe-stranded.cwl

Branch/Commit ID: master

Workflow for Metagenomics from raw reads to annotated bins. Steps: - workflow_illumina_quality.cwl: - FastQC (control) - fastp (quality trimming) - kraken2 (taxonomy) - bbmap contamination filter - SPAdes (Assembly) - QUAST (Assembly quality report) - BBmap (Read mapping to assembly) - Contig binning (OPTIONAL)

https://git.wur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_metagenomics_assembly.cwl

Branch/Commit ID: master

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/aml_trio_cle.cwl

Branch/Commit ID: master