Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph HS Metrics workflow

https://github.com/fgomez02/analysis-workflows.git

Path: definitions/subworkflows/hs_metrics.cwl

Branch/Commit ID: No_filters_detect_variants
workflow graph tracking_master.cwl

https://github.com/rosafilgueira/cyclon_usecase.git

Path: run_cyclon/tracking_master.cwl

Branch/Commit ID: master
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: steps/salmon-quantification.cwl

Branch/Commit ID: baee233
workflow graph TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)

https://github.com/mr-c/workflow-is-cwl.git

Path: workflows/TransDecoder-v5-wf-2steps.cwl

Branch/Commit ID: fix_sbg_namespace
workflow graph kf_alignment_fq_input_wf.cwl

https://github.com/cr-ste-justine/chujs-alignment-workflow.git

Path: workflows/kf_alignment_fq_input_wf.cwl

Branch/Commit ID: dev
workflow graph workflow.cwl

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_download/workflow.cwl

Branch/Commit ID: master
workflow graph Prepare user input

Prepare user input for NCBI-PGAP pipeline

 https://github.com/ncbi/pgap.git

Path: prepare_user_input2.cwl

Branch/Commit ID: 68311dd5328bf6b782a370a0253b41062a3359a3
workflow graph contig construction and protein prediction

\"This workflow performs construction of metagenomic contigs and prediction protein sequences for metagenomic contigs. It executes 2 processes: contig construction and protein prediction. related CWL file: ./Tools/06_bwa_mem.cwl ./Tools/07_samtools_sort.cwl ./Tools/08_samtools_flagstat.cwl\"

https://github.com/RyoMameda/workflow_cwl.git

Path: Workflow/metagenomic_contig_mapping_sw.cwl

Branch/Commit ID: main
workflow graph umi duplex alignment fastq workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/alignment_umi_duplex.cwl

Branch/Commit ID: downsample_and_recall
workflow graph bulk_analysis.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/bulk_analysis.cwl

Branch/Commit ID: d0e845d