Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph rhapsody_pipeline_2.0.cwl#VDJ_Preprocess_Reads.cwl

https://github.com/Chi-CRL/cwl_check_workflow.git

Path: rhapsody_pipeline_2.0.cwl

Branch/Commit ID: main

Packed ID: VDJ_Preprocess_Reads.cwl
workflow graph EMG assembly for paired end Illumina

https://github.com/FarahZKhan/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: master
workflow graph FASTQ to BQSR

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/fastq_to_bqsr.cwl

Branch/Commit ID: 258bd4353ad1ca7790b3ae626bf42ab8194e7561
workflow graph CNA Pipeline

https://github.com/ChrisMaherLab/PACT.git

Path: pipelines/cna_pipeline.cwl

Branch/Commit ID: master
workflow graph Runs InterProScan on batches of sequences to retrieve functional annotations.

https://github.com/EBI-Metagenomics/workflow-is-cwl.git

Path: workflows/InterProScan-v5-chunked-wf.cwl

Branch/Commit ID: master
workflow graph pcawg_annotate_wf.cwl

This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `

https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git

Path: pcawg_annotate_wf.cwl

Branch/Commit ID: master
workflow graph 04-quantification-pe-stranded.cwl

RNA-seq 04 quantification

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/04-quantification-pe-stranded.cwl

Branch/Commit ID: master
workflow graph PGAP Pipeline

PGAP pipeline for external usage, powered via containers

 https://github.com/ncbi/pgap.git

Path: wf_common.cwl

Branch/Commit ID: dev
workflow graph wf_rnaediting2strands.cwl

https://github.com/YeoLab/sailor.git

Path: cwl/wf_rnaediting2strands.cwl

Branch/Commit ID: master
workflow graph rnaediting1strand.cwl

https://github.com/YeoLab/sailor.git

Path: CWL-SINGULARITY-pipeline-building-code/cwl/rnaediting1strand.cwl

Branch/Commit ID: 6f21086