Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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chipseq-pe.cwl
Runs ChIP-Seq BioWardrobe basic analysis with paired-end input data files. |
https://github.com/Barski-lab/workflows.git
Path: workflows/chipseq-pe.cwl Branch/Commit ID: master |
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qc_workflow_wo_waltz.cwl
This workflow is intended to be used to test the QC module, without having to run the long waltz step |
https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/QC/qc_workflow_wo_waltz.cwl Branch/Commit ID: master |
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mut3.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/mut3.cwl Branch/Commit ID: d5d86428e41f7e754a49e8d27e5abaee0762645e |
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collate_unique_SSU_headers.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/collate_unique_SSU_headers.cwl Branch/Commit ID: a8abd0e |
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three_step_color.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/three_step_color.cwl Branch/Commit ID: 2f12f598b258fea93c8ef0db6e829a87bc3e341d |
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SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination
Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs. |
https://github.com/Barski-lab/workflows.git
Path: tools/soupx-subworkflow.cwl Branch/Commit ID: 94f3486d3867b9ece47c07bc8fe47f57569786f4 |
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03-map-pe.cwl
STARR-seq 03 mapping - reads: PE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/STARR-seq_pipeline/03-map-pe.cwl Branch/Commit ID: master |
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msi.cwl
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https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/subworkflows/msi.cwl Branch/Commit ID: master |
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samtools_sort
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/samtools_sort.cwl Branch/Commit ID: master |
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final_filtering
Final filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/final_filtering.cwl Branch/Commit ID: 1.0.5 |
