Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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hisat2-cufflinks_wf_se.cwl
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https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/hisat2-cufflinks/single_end/hisat2-cufflinks_wf_se.cwl Branch/Commit ID: master |
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host.sort.workflow.cwl
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https://github.com/azzaea/tsts.git
Path: cwl/host.sort.workflow.cwl Branch/Commit ID: master |
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GSC Paired Jobs
Serial combination of KnowEnG tools |
https://github.com/KnowEnG-Research/cwl-specification.git
Path: code/workflow.gsc.cwl Branch/Commit ID: master |
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clean_reads_qc.cwl
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https://github.com/ngs-mstb/micgent.git
Path: python/lib/MICGENT/data/cwl/clean_reads_qc.cwl Branch/Commit ID: master |
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gathered exome alignment and somatic variant detection for cle purpose
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/somatic_exome_cle_gathered.cwl Branch/Commit ID: low-vaf |
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EMG pipeline v3.0 (paired end version)
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: a8abd0e |
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Subsample BAM file creating a tagAlign and pseudoreplicates
This workflow creates a subsample from a BAM file creating a tagAlign and pseudoreplicates |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/subample-pseudoreplicates.cwl Branch/Commit ID: master |
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chksum_for_corrupted_fastq_files.cwl
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https://github.com/cancerit/workflow-seq-import.git
Path: cwls/chksum_for_corrupted_fastq_files.cwl Branch/Commit ID: develop |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: 9c57dba |
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03-map-se.cwl
ATAC-seq 03 mapping - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/03-map-se.cwl Branch/Commit ID: master |
