Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	picard_markduplicates Mark duplicates	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl Branch/Commit ID: master
	broad-best-practice-data-pre-processing-workflow-4-1-0-0_decomposed.cwl	https://github.com/sevenbridges-openworkflows/Broad-Best-Practice-Data-pre-processing-CWL1.0-workflow.git Path: broad-best-practice-data-pre-processing-workflow-4-1-0-0_decomposed.cwl Branch/Commit ID: master
	exomeseq-gatk4-03-organizedirectories.cwl	https://github.com/Duke-GCB/bespin-cwl.git Path: subworkflows/exomeseq-gatk4-03-organizedirectories.cwl Branch/Commit ID: gatk4-fixes
	download_gtf.cwl	https://github.com/yyoshiaki/VIRTUS.git Path: workflow/download_gtf.cwl Branch/Commit ID: master
	zip_and_index_vcf.cwl This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output.	https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git Path: zip_and_index_vcf.cwl Branch/Commit ID: 1.0.0
	Filter single sample sv vcf from depth callers(cnvkit/cnvnator)	https://github.com/apaul7/cancer-genomics-workflow.git Path: definitions/subworkflows/sv_depth_caller_filter.cwl Branch/Commit ID: low-vaf
	strelkaSomaticVariantCaller_v0_1_1.cwl	https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git Path: janis_pipelines/wgs_somatic/cwl/tools/strelkaSomaticVariantCaller_v0_1_1.cwl Branch/Commit ID: master
	protein_extract	https://github.com/ncbi/pgap.git Path: progs/protein_extract.cwl Branch/Commit ID: master
	cmsearch-multimodel.cwl	https://github.com/proteinswebteam/ebi-metagenomics-cwl.git Path: workflows/cmsearch-multimodel.cwl Branch/Commit ID: master
	annotate.cwl	https://github.com/hubmapconsortium/hra-workflows.git Path: steps/annotate.cwl Branch/Commit ID: main

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