Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph contig construction and protein prediction

\"This workflow performs construction of metagenomic contigs and prediction protein sequences for metagenomic contigs. It executes 2 processes: contig construction and protein prediction. related CWL file: ./Tools/06_bwa_mem.cwl ./Tools/07_samtools_sort.cwl ./Tools/08_samtools_flagstat.cwl\"

https://github.com/RyoMameda/workflow_cwl.git

Path: Workflow/metagenomic_contig_mapping_sw.cwl

Branch/Commit ID: main

workflow graph umi duplex alignment fastq workflow

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/alignment_umi_duplex.cwl

Branch/Commit ID: downsample_and_recall

workflow graph bulk_analysis.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/bulk_analysis.cwl

Branch/Commit ID: d0e845d

workflow graph germline-gpu.cwl

https://github.com/NCGM-genome/WGSpipeline.git

Path: Workflows/germline-gpu.cwl

Branch/Commit ID: main

workflow graph gathered exome alignment and somatic variant detection

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/somatic_exome_gathered.cwl

Branch/Commit ID: downsample_and_recall

workflow graph super-enhancer.cwl

Both `islands_file` and `islands_control_file` should be produced by the same cwl tool (iaintersect.cwl or macs2-callpeak-biowardrobe-only.cwl)

https://github.com/barski-lab/workflows.git

Path: workflows/super-enhancer.cwl

Branch/Commit ID: master

workflow graph presto_nosort.cwl

https://github.com/eosc-lofar/presto-cwl.git

Path: presto_nosort.cwl

Branch/Commit ID: visualise

workflow graph prep.cwl

https://git.astron.nl/RD/LINC.git

Path: workflows/linc_target/prep.cwl

Branch/Commit ID: master

workflow graph qc.cwl

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/qc.cwl

Branch/Commit ID: master

workflow graph module-2.cwl

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/module-2.cwl

Branch/Commit ID: master