Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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msi_workflow.cwl
Workflow to run the MSI analysis on a batch of samples |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/msi_workflow.cwl Branch/Commit ID: dbff0c5ae06a8b21ec70bc8279f32bce151cbfc2 |
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Detect Variants workflow for nonhuman WGS pipeline
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/detect_variants_wgs_nonhuman.cwl Branch/Commit ID: low-vaf |
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alignment for nonhuman with qc
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/alignment_wgs_nonhuman.cwl Branch/Commit ID: low-vaf |
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wf_full_IDR_pipeline_1input_scatter.cwl
The main workflow that: produces two reproducible peaks via IDR given two eCLIP samples (1 input, 1 IP each). runs the 'rescue ratio' statistic runs the 'consistency ratio' statistic |
https://github.com/YeoLab/merge_peaks.git
Path: cwl/wf_full_IDR_pipeline_1input_scatter.cwl Branch/Commit ID: master |
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REGENIE workflow
REGENIE workflow |
https://github.com/manning-lab/regenie-workflow.git
Path: cwl/regenie_workflow.cwl Branch/Commit ID: master |
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GATK-Sub-Workflow-h3abionet-snp.cwl
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https://github.com/h3abionet/h3agatk.git
Path: workflows/GATK/GATK-Sub-Workflow-h3abionet-snp.cwl Branch/Commit ID: 1.0.1 |
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CUTnRUN.cwl
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https://github.com/CompEpigen/ChIPseq_workflows.git
Path: CWL/workflows/CUTnRUN.cwl Branch/Commit ID: master |
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spiel.cwl
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https://github.com/gijzelaerr/spiel.git
Path: spiel.cwl Branch/Commit ID: tutorial |
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helloworld.cwl
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https://github.com/reanahub/reana-demo-helloworld.git
Path: workflow/cwl/helloworld.cwl Branch/Commit ID: master |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/ICGC-TCGA-PanCancer/pcawg-snv-indel-annotation.git
Path: annotator_sub_wf.cwl Branch/Commit ID: 1.0.0 |
