Explore Workflows
View already parsed workflows here or click here to add your own
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Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
https://github.com/leipzig/2020-covid-19-bh.git
Path: Ambarish_Kumar_SOP/CWL/Ambarish_Kumar_SOP-GATK-SAR-CoV-2.cwl Branch/Commit ID: main |
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kb-tss-preprocess-all.cwl#align-texts-wf.cwl
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https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/kb-tss-preprocess-all.cwl Branch/Commit ID: master Packed ID: align-texts-wf.cwl |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 3b602cb |
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Hello World
Outputs a message using echo |
https://github.com/common-workflow-library/legacy.git
Path: workflows/hello/hello-param.cwl Branch/Commit ID: master |
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dynresreq-workflow-stepdefault.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/dynresreq-workflow-stepdefault.cwl Branch/Commit ID: main |
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Merge, annotate, and generate a TSV for SVs
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: low-vaf |
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Identifies non-coding RNAs using Rfams covariance models
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https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/subworkflows/cmsearch-multimodel-raw-data.cwl Branch/Commit ID: master |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: f914942 |
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5S-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/5S-from-tablehits.cwl Branch/Commit ID: f914942 |
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gpas_purecn_tumor_only_filtration.cwl
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https://github.com/NCI-GDC/gdc_tosvc_workflow.git
Path: gdc-purecn-tumor-only-filtration-cwl/gpas_purecn_tumor_only_filtration.cwl Branch/Commit ID: master |
