Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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scatter-valuefrom-wf5.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/scatter-valuefrom-wf5.cwl Branch/Commit ID: main |
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Prepare user input
Prepare user input for NCBI-PGAP pipeline |
https://github.com/ncbi/pgap.git
Path: prepare_user_input2.cwl Branch/Commit ID: test |
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01-qc-pe.cwl
RNA-seq 01 QC - reads: PE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/01-qc-pe.cwl Branch/Commit ID: master |
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BAT_workflow.cwl
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https://github.com/CompEpigen/PipelineOlympics.git
Path: CWL/workflows/BAT/BAT_workflow.cwl Branch/Commit ID: 72ad937a444b6603983f19595ba4a3434557e006 |
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umi duplex alignment fastq workflow
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/pipelines/umi_duplex_alignment.cwl Branch/Commit ID: No_filters_detect_variants |
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Single-cell RNA-Seq Analyze
Single-cell RNA-Seq Analyze Runs filtering, normalization, scaling, integration (optionally) and clustering for a single or aggregated single-cell RNA-Seq datasets. |
https://github.com/Barski-lab/sc-seq-analysis.git
Path: workflows/sc-rna-analyze-wf.cwl Branch/Commit ID: main |
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preprocess_vcf.cwl
This workflow will perform preprocessing steps on VCFs for the OxoG/Variantbam/Annotation workflow. |
https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git
Path: preprocess_vcf.cwl Branch/Commit ID: 1.0.0 |
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qc_generator
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https://github.com/msk-access/qc_generation.git
Path: access_qc__packed.cwl Branch/Commit ID: develop Packed ID: qc_generator.cwl |
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cnv_manta
CNV Manta calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_manta.cwl Branch/Commit ID: 1.0.6 |
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01-qc-se.cwl
RNA-seq 01 QC - reads: SE |
https://github.com/alexbarrera/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/01-qc-se.cwl Branch/Commit ID: master |
