Explore Workflows

BAM filtering

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/bam_filtering.cwl

Branch/Commit ID: 1.0.9

A workflow that uses SVision-Pro to identify structural variants in tumor/normal paired samples from Oxford Nanopore Technology (ONT) long-read sequencing data.

https://github.com/bio-ontology-research-group/crc.git

Path: workflow/main.cwl

Branch/Commit ID: main

\"Subworkflow for Metagenome Annotation This subworkflow is for annotation of predicted protein coding sequences. \"

https://github.com/RyoMameda/workflow_cwl.git

Path: Workflow/annotation_sw.cwl

Branch/Commit ID: main

https://github.com/hamid58b/cancer-genomics-workflow.git

Path: pindel/pindel_cat.cwl

Branch/Commit ID: master

https://github.com/mr-c/workflow-is-cwl.git

Path: workflows/cmsearch-multimodel-wf.cwl

Branch/Commit ID: fix_sbg_namespace

https://github.com/vdikan/cwl-gk-thermal.git

Path: cwl/gk-full-step-qeheat.cwl

Branch/Commit ID: master

**VCF to GDS** workflow converts VCF or BCF files into Genomic Data Structure (GDS) format. GDS files are required by all workflows utilizing the GENESIS or SNPRelate R packages. _Filename requirements_: The input file names should follow the pattern <A>chr<X>.<y> For example: 1KG_phase3_subset_chr1.vcf.gz Some of the tools inside the workflow infer the chromosome number from the file by expecting this pattern of file name.

https://github.com/sevenbridges-openworkflows/uw-genesis-topmed-cwl.git

Path: vcftogds/vcf-to-gds-wf.cwl

Branch/Commit ID: master

https://git.astron.nl/RD/LINC.git

Path: workflows/linc_target/prep.cwl

Branch/Commit ID: 96f1caf46ca4859e7cb49919dcb13bf53abf4393

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/io-any-wf-1.cwl

Branch/Commit ID: main

Workflow without outputs.

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/no-outputs-wf.cwl

Branch/Commit ID: master