Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph default-wf5.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/default-wf5.cwl

Branch/Commit ID: main
workflow graph compile1.cwl#main

https://github.com/YangYang-Lcos/legacy.git

Path: workflows/compile/compile1.cwl

Branch/Commit ID: master

Packed ID: main
workflow graph exome alignment and somatic variant detection

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/somatic_exome_mouse.cwl

Branch/Commit ID: downsample_and_recall
workflow graph wgs alignment and tumor-only variant detection

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/tumor_only_wgs.cwl

Branch/Commit ID: downsample_and_recall
workflow graph WGS QC workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/qc_wgs.cwl

Branch/Commit ID: c235dc6d623879a6c4f5fb307f545c9806eb2d23
workflow graph diadem_workflow_test1.cwl

https://github.com/cnherrera/CWL_Workflow_DIADEM_use_case.git

Path: diadem_workflow_test1.cwl

Branch/Commit ID: main
workflow graph revcomp.cwl

https://github.com/common-workflow-language/workflows.git

Path: workflows/sanbi_cwltutorial/revcomp/revcomp.cwl

Branch/Commit ID: master
workflow graph revcomp_with_rename.cwl

https://github.com/puentesdiaz/workflows.git

Path: workflows/sanbi_cwltutorial/revcomp/revcomp_with_rename.cwl

Branch/Commit ID: master
workflow graph Illumina read quality control, trimming and contamination filter.

**Workflow for Illumina paired read quality control, trimming and filtering.**<br /> Multiple paired datasets will be merged into single paired dataset.<br /> Summary: - FastQC on raw data files<br /> - fastp for read quality trimming<br /> - BBduk for phiX and (optional) rRNA filtering<br /> - Kraken2 for taxonomic classification of reads (optional)<br /> - BBmap for (contamination) filtering using given references (optional)<br /> - FastQC on filtered (merged) data<br /> **All tool CWL files and other workflows can be found here:**<br> Tools: https://git.wur.nl/unlock/cwl/-/tree/master/cwl<br> Workflows: https://git.wur.nl/unlock/cwl/-/tree/master/cwl/workflows<br> WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default

https://git.wageningenur.nl/unlock/cwl.git

Path: cwl/workflows/workflow_illumina_quality.cwl

Branch/Commit ID: master
workflow graph dropEst pipeline

https://github.com/hubmapconsortium/ucsd-snareseq-pipeline.git

Path: dropest.cwl

Branch/Commit ID: master