Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph minibam_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/david4096/oxog-dockstore-tools.git

Path: minibam_sub_wf.cwl

Branch/Commit ID: develop
workflow graph SPRM pipeline

https://github.com/hubmapconsortium/sprm.git

Path: pipeline.cwl

Branch/Commit ID: 0cb2efa
workflow graph cnv_manta

CNV Manta calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/abstract_operations/subworkflows/cnv_manta.cwl

Branch/Commit ID: master
workflow graph module-5

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/module-5.cwl

Branch/Commit ID: 2ecd7f3cdebf51b8b495046ff130c73cc786b9ec
workflow graph cnv.cwl

Copynumber variation workflow, runs ADTEx and Varscan

 https://github.com/BD2KGenomics/dockstore_workflow_cnv.git

Path: cnv.cwl

Branch/Commit ID: v1.0.0
workflow graph PGAP Pipeline, simple user input, PGAPX-134

PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)

https://github.com/ncbi/pgap.git

Path: pgap.cwl

Branch/Commit ID: master
workflow graph workflow-blast-phobius.cwl

https://github.com/ebi-wp/webservice-cwl.git

Path: workflows/workflow-blast-phobius.cwl

Branch/Commit ID: master
workflow graph wf-variantcall.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: wes-agha-test/wes_chr21_test-workflow-arvados/wf-variantcall.cwl

Branch/Commit ID: master
workflow graph wgs alignment and somatic variant detection

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/somatic_wgs_nonhuman.cwl

Branch/Commit ID: low-vaf
workflow graph EMG assembly for paired end Illumina

https://github.com/farahzkhan/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: master