Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph heatmap-prepare.cwl

Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order.

https://github.com/mr-c/datirium-workflows.git

Path: tools/heatmap-prepare.cwl

Branch/Commit ID: license_test
workflow graph wgs alignment and tumor-only variant detection

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/tumor_only_wgs.cwl

Branch/Commit ID: low-vaf
workflow graph kfdrc-gatk-haplotypecaller-wf.cwl

https://github.com/kids-first/kf-alignment-workflow.git

Path: workflows/kfdrc-gatk-haplotypecaller-wf.cwl

Branch/Commit ID: master
workflow graph rest_parallel.cwl

https://github.com/yuandou168/DecentralizedFL-CWL.git

Path: CWL_Workflow/rest_parallel.cwl

Branch/Commit ID: main
workflow graph tt_univec_wnode.cwl

https://github.com/ncbi/pgap.git

Path: task_types/tt_univec_wnode.cwl

Branch/Commit ID: f697b1836fea55d442bedc2bb77afe5d4ef94b05
workflow graph Production Configuration

This workflow prepares the configuration of the subsequent production steps.

https://gitlab.cta-observatory.org/cta-computing/dpps/dpps-workflows.git

Path: workflows/wms/uc-wms-XXX.cwl

Branch/Commit ID: main
workflow graph genome-kallisto-index.cwl

Generates a FASTA file with the DNA sequences for all transcripts in a GFF file and builds kallisto index

https://github.com/Barski-lab/workflows.git

Path: tools/genome-kallisto-index.cwl

Branch/Commit ID: master
workflow graph ATACseq.cwl

https://github.com/CompEpigen/ATACseq_workflows.git

Path: CWL/workflows/ATACseq.cwl

Branch/Commit ID: master
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: release
workflow graph oxog_sub_wf.cwl

This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow!

https://github.com/icgc-tcga-pancancer/oxog-dockstore-tools.git

Path: oxog_sub_wf.cwl

Branch/Commit ID: 1.0.0