Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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hmmsearch_wnode and gpx_qdump combined workflow to apply scatter/gather
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode_plus_qdump.cwl Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81 |
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workflow_simple.cwl
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https://github.com/EvolutionaryGenomics/scalability-reproducibility-chapter.git
Path: CWL/workflow_simple.cwl Branch/Commit ID: master |
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Tumor-Only Detect Variants workflow
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https://github.com/fgomez02/analysis-workflows.git
Path: definitions/pipelines/tumor_only_detect_variants.cwl Branch/Commit ID: No_filters_detect_variants |
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map medium and long reads (> 100 bp) against reference genome
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https://github.com/common-workflow-library/bio-cwl-tools.git
Path: bwa/BWA-Mem2-single.cwl Branch/Commit ID: release |
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extract_gencoll_ids
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https://github.com/ncbi/pgap.git
Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: dev |
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Gathered Downsample and HaplotypeCaller
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/gathered_downsample_and_recall.cwl Branch/Commit ID: master |
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bwa_mem
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/bwa_mem.cwl Branch/Commit ID: 1.0.9 |
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exomeseq-02-variantdiscovery.cwl
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https://github.com/Duke-GCB/bespin-cwl.git
Path: subworkflows/exomeseq-02-variantdiscovery.cwl Branch/Commit ID: 3318d9fcfd153ad3e9744d5e495d9c39aee20916 |
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ProGENI
network-guided gene prioritization method implementation by KnowEnG that ranks gene measurements by their correlation to observed phenotypes |
https://github.com/KnowEnG/cwl-gene-prioritization.git
Path: Dockstore.cwl Branch/Commit ID: master |
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salmon_wf_pe.cwl
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https://github.com/pitagora-network/pitagora-cwl.git
Path: workflows/salmon/paired_end/salmon_wf_pe.cwl Branch/Commit ID: master |
