Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph preprocess-ont.cwl

https://github.com/fjrmoreews/cwl-workflow-SARS-CoV-2.git

Path: PreProcessing/preprocess-ont.cwl

Branch/Commit ID: master
workflow graph methylCtools_singlelib_start_with_trimmed.cwl

https://github.com/ifishlin/Benchmarking_CWL.git

Path: workflows/methylCtools/methylCtools_singlelib_start_with_trimmed.cwl

Branch/Commit ID: main
workflow graph PGAP Pipeline

PGAP pipeline for external usage, powered via containers

 https://github.com/ncbi/pgap.git

Path: wf_common.cwl

Branch/Commit ID: test
workflow graph md_launch_mutate_reduced.cwl

https://github.com/douglowe/biobb_hpc_cwl_md_list.git

Path: md_launch_mutate_reduced.cwl

Branch/Commit ID: main
workflow graph SetNightSkyBackgroundRate

Derive or calculate night-sky background rate per pixel.

 https://github.com/gammasim/workflows.git

Path: workflows/SetNightSkyBackgroundRate.cwl

Branch/Commit ID: main
workflow graph SetMirrorPanelAlignment

Derive mirror panel alignment parameters from measurements of the optical point-spread functions.

 https://github.com/gammasim/workflows.git

Path: workflows/SetMirrorPanelAlignment.cwl

Branch/Commit ID: main
workflow graph qiime2 create phylogenetic tree

Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/duke-gcb/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: qiime2-workflow

Packed ID: qiime2-05-phylogeny.cwl
workflow graph cnv_exomedepth

CNV ExomeDepth calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_exome_depth.cwl

Branch/Commit ID: 1.0.6
workflow graph steplevel-resreq.cwl

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/steplevel-resreq.cwl

Branch/Commit ID: master
workflow graph qa_check_subwf.cwl

This subworkflow will perform a QA check on the OxoG outputs. It will perform the QA check on a single tumour and it associated VCFs

https://github.com/svonworl/OxoG-Dockstore-Tools.git

Path: qa_check_subwf.cwl

Branch/Commit ID: develop