Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Transcripts annotation workflow
|
https://github.com/mscheremetjew/workflow-is-cwl.git
Path: workflows/TranscriptsAnnotation-i5only-wf.cwl Branch/Commit ID: cwlexec |
|
|
|
EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
|
https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: f993cad |
|
|
|
Chunked version of phmmer-v3.2.cwl
|
https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/phmmer-v3.2-chunked-wf.cwl Branch/Commit ID: assembly |
|
|
|
exome alignment and germline variant detection
|
https://github.com/fgomez02/analysis-workflows.git
Path: definitions/subworkflows/germline_detect_variants.cwl Branch/Commit ID: No_filters_detect_variants |
|
|
|
raw-reads-1.cwl
|
https://github.com/EBI-Metagenomics/pipeline-v5.git
Path: workflows/conditionals/raw-reads/raw-reads-1.cwl Branch/Commit ID: master |
|
|
|
bam_filtering
BAM filtering |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/abstract_operations/subworkflows/bam_filtering.cwl Branch/Commit ID: master |
|
|
|
word-mapping-test-files-wf.cwl#word-mapping-wf.cwl
|
https://github.com/KBNLresearch/ochre.git
Path: ochre/cwl/word-mapping-test-files-wf.cwl Branch/Commit ID: master Packed ID: word-mapping-wf.cwl |
|
|
|
hisat2_samtools_htseq-dexseq.stringtie-prepDE-DESeq2.cwl
|
https://github.com/rawgene/cwl.git
Path: workflows/hisat2_samtools_htseq-dexseq.stringtie-prepDE-DESeq2.cwl Branch/Commit ID: master |
|
|
|
qiime2 DADA2 detect/correct sequence data
Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/duke-gcb/bespin-cwl.git
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: 68c92437c854a200433ee684067f81f13de5d8eb Packed ID: qiime2-03-dada2.cwl |
|
|
|
02-trim-pe.cwl
ATAC-seq 02 trimming - reads: PE |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/ATAC-seq_pipeline/02-trim-pe.cwl Branch/Commit ID: v1.0.0 |
