Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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project-workflow.cwl
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https://github.com/mskcc/argos-cwl.git
Path: project-workflow.cwl Branch/Commit ID: master |
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EMG pipeline v3.0 (single end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3.cwl Branch/Commit ID: 5833078 |
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rRNA_selection.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 3168316 |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: fa86fce |
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04-quantification-pe-stranded.cwl
RNA-seq 04 quantification |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/04-quantification-pe-stranded.cwl Branch/Commit ID: master |
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Nanopore Quality Control and Filtering
**Workflow for nanopore read quality control and contamination filtering.** - FastQC before filtering (read quality control) - Kraken2 taxonomic read classification - Minimap2 read filtering based on given references - FastQC after filtering (read quality control) **All tool CWL files and other workflows can be found here:**<br> Tools: https://git.wur.nl/unlock/cwl/-/tree/master/cwl<br> Workflows: https://git.wur.nl/unlock/cwl/-/tree/master/cwl/workflows<br> WorkflowHub: https://workflowhub.eu/projects/16/workflows?view=default |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_nanopore_quality.cwl Branch/Commit ID: master |
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Dockstore.cwl
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https://github.com/wshands/ghapps-single-workflow.git
Path: Dockstore.cwl Branch/Commit ID: master |
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Unaligned to aligned BAM
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https://github.com/MarkRobbo/workflows.git
Path: workflows/hello/exome_alignment_packed.cwl Branch/Commit ID: master Packed ID: align.cwl |
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CNV_pipeline
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/workflow.cwl Branch/Commit ID: master |
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bgzip and index VCF
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/bgzip_and_index.cwl Branch/Commit ID: downsample_and_recall |
