Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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samples_fillout_workflow.cwl
Workflow to run GetBaseCountsMultiSample fillout on a number of samples, each with their own bam and maf files |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/samples_fillout_workflow.cwl Branch/Commit ID: 3bc4fab5503e58521ed0eb9c0d035ac18460dc13 |
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protein annotation
Proteins - predict, filter, cluster, identify, annotate |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/protein-filter-annotation.workflow.cwl Branch/Commit ID: master |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 43d2fb8 |
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flagging.cwl
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https://github.com/ska-sa/den.git
Path: cwl/workflows/flagging.cwl Branch/Commit ID: master |
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DeriveArrayElementCoordinates
Derive array element coordinates in the simulation pipeline coordinate system. |
https://github.com/gammasim/workflows.git
Path: workflows/DeriveArrayElementCoordinates.cwl Branch/Commit ID: main |
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pindel parallel workflow
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https://github.com/hamid58b/cancer-genomics-workflow.git
Path: pindel/workflow.cwl Branch/Commit ID: master |
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bam to trimmed fastqs
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https://github.com/tmooney/cancer-genomics-workflow.git
Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl Branch/Commit ID: downsample_and_recall |
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SSU-from-tablehits.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/SSU-from-tablehits.cwl Branch/Commit ID: 1b0851e |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: c1f8b22 |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: workflows/rna-selector.cwl Branch/Commit ID: master |
