Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph wf.cwl#VDJ_Assemble_and_Annotate_Contigs_TCR.cwl

https://github.com/aheinzel/tmp_rhapsody_for_cwl_vis.git

Path: wf.cwl

Branch/Commit ID: main

Packed ID: VDJ_Assemble_and_Annotate_Contigs_TCR.cwl
workflow graph phase VCF

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/phase_vcf.cwl

Branch/Commit ID: downsample_and_recall
workflow graph wf_full_IDR_pipeline_2inputs_sample.cwl

This workflow essentially restructures the inputs before sending to wf_full_IDR_pipeline_2inputs.cwl

https://github.com/YeoLab/merge_peaks.git

Path: cwl/wf_full_IDR_pipeline_2inputs_sample.cwl

Branch/Commit ID: master
workflow graph qiime2 DADA2 detect/correct sequence data

Option 1: DADA2 from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-03-dada2.cwl
workflow graph SetArrayElementCoordinates

Transform array element coordinates into the coordinate system required by the simulation pipeline (i.e., CORSIKA system).

 https://github.com/gammasim/workflows.git

Path: workflows/SetArrayElementCoordinates.cwl

Branch/Commit ID: main
workflow graph bird_workflow.cwl

https://github.com/ReddyLab/bird-workflow.git

Path: bird_workflow.cwl

Branch/Commit ID: main
workflow graph step3: create STAR index

create STAR index for mapping CAGE-Seq data (step 1: decompress reference genome fasta file, step 2: create STAR index)

 https://github.com/RyoNozu/CWL4IncorporateTSSintoGXF.git

Path: workflow/02_star_index_subworkflow.cwl

Branch/Commit ID: main
workflow graph dedup-2-pass-distr.cwl

run 2-pass dedup: algo LocusCollector + algo Dedup sequentially in distributed mode

 https://github.com/Sentieon/Sentieon-cwl.git

Path: stage/dedup-2-pass-distr.cwl

Branch/Commit ID: master
workflow graph bacterial_orthology_cond

https://github.com/ncbi/pgap.git

Path: bacterial_orthology/wf_bacterial_orthology_conditional.cwl

Branch/Commit ID: dev
workflow graph indexing_bed

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/abstract_operations/subworkflows/indexing_bed.cwl

Branch/Commit ID: master